Publications

List of our technical and clinical publications
  • HyperSpace: Hypernetworks for Spacing-Adaptive Image Segmentation [PDF] [CODE]
    S. Joutard, M. Pietsch, R. Prevost
    Accepted at MICCAI 2024
  • Video-CT MAE: Self-Supervised Video-CT Domain Adaptation for Vertebral Fracture Diagnosis
    L. Buess, M. F. Stollenga, D. Schinz, B. Wiestler, J. Kirschke, A. Maier, N. Navab, M. Keicher
    In Proceedings of Medical Imaging with Deep Learning, 2024
  • Tailored Intraoperative MRI Strategies in High-Grade Glioma Surgery: A Machine Learning–Based Radiomics Model Highlights Selective Benefits [LINK]
    M. Aichholzer, P. Rauch, L. Kastler, J. Pichler, K. Aufschnaiter-Hiessböck, F. Ruiz-Navarro, S. Aspalter, S. Hartl, W. Schimetta, P. Böhm, I. Manakov, W. Thomae, M. Gmeiner, A. Gruber, H. Stefanits
    Operative Neurosurgery, Vol. 26, No. 6, pp. 645-654, June 2024
  • High-Resolution Phase-Contrast Imaging for Large Samples at Synchrotron Sources with Time-Varying Beam Profiles
    D. John, J. Chen, C. Gassner, L. Petzold, M. Riedel, J. U. Hammel, J. Moosmann, F. Beckmann, J. Herzen
    International Symposium on Medical Applications of X-Ray Phase-Contrast and Photon-Counting (IMXP), June 2024
  • RIDE: Self-Supervised Learning of Rotation-Equivariant Keypoint Detection and Invariant Description for Endoscopy [PDF]
    M. A. Karaoglu, V. Markova, N. Navab, B. Busam, A. Ladikos
    Proceedings of the 2024 IEEE International Conference on Robotics and Automation (ICRA), IEEE
  • 2D-3D Deformable Image Registration of Histology Slide and Phase-contrast Micro-CT [PDF]
    J. Chen, V. Nguyen, V. Stehl, M. Al Kallaa, M. Thalwaththe Gedara, A. Harbecke, S. Moser, M. Seidl, M. Wieczorek
    6th International Conference on X-ray and Neutron Phase Imaging with Gratings (XNPIG), April 2024
  • Surface Microscopic Techniques for Distortion-Free Digital Pathology
    M. Al Kallaa, V. Stehl, J. Chen, M. Wieczorek, M. Thalwaththe Gedara, S. Moser, V. Heusinger-Heß, M. Seidl
    107. Jahrestagung der Deutschen Gesellschaft für Pathologie, May 2024
  • Identification of Relevant Tumor Tissue Structures and Corresponding Metastasis Over Deep Learning of Annotated µCT Data
    V. Stehl, J. Chen, M. Thalwaththe Gedara, M. Al Kallaa, C. Lölkes, M. Wieczorek, V. Heusinger-Hess, M. Olbinado, V. Novak, M. Seidl
    107. Jahrestagung der Deutschen Gesellschaft für Pathologie, May 2024
  • From Molecular Signatures to Radiomics: Tailoring Neurooncological Strategies Through Forecasting of Glioma Growth [LINK]
    P. Rauch, M. Aichholzer, C. Serra, O. Zanier, V. E. Staartjes, P. Böhm, G. Seyer, H. Wagner, I. Manakov, M. Sonnberger, N. Stroh, S. Aspalter, K. Aufschnaiter-Hiessböck, T. Rossmann, A. Leibetseder, S. Katletz, A. Gruber, M. Gmeiner, H. Stefanits
    Neurosurgical Focus, V: 56, I: 2, 2024, S. E5
  • The Global Track Concept for Assessment of Engaging Hill-Sachs Defects in Anterior Shoulder Instability
    P. Moroder, D. Akguen, A. Paksoy, H. Gebauer, N. Barthod-Tonnot, M. Lupetti, V. Markova, O. Zettinig, S. Parada, K. Karpinski
    The American Journal of Sports Medicine, V: 52, I: 5, pp. 1292-1298, 2024
  • Anatomy-Aware Computed Tomography-to-Ultrasound Spine Registration [PDF]
    M. F. Azampour, M. Tirindelli, J. Lameski, M. Gafencu, E. Tagliabue, E. Fatemizadeh, I. Hacihaliloglu, N. Navab
    Medical Physics, Vol. 51, No. 3, pp. 2044-2056, March 2024
  • Reliability of Manual Measurements Versus Semiautomated Software for Glenoid Bone Loss Quantification in Patients With Anterior Shoulder Instability. [PDF]
    K. Karpinski, D. Akguen, H. Gebauer, A. Paksoy, M. Lupetti, V. Markova, O. Zettinig, and P. Moroder
    Orthopaedic Journal of Sports Medicine, Volume 12, Issue 2, February 2024
  • DISA: DIfferentiable Similarity Approximation for Universal Multimodal Registration [PDF]
    M. Ronchetti, W. Wein, N. Navab, O. Zettinig, R. Prevost
    Computer Vision and Pattern Recognition--MICCAI 2023
  • Robust vertebra identification using simultaneous node and edge predicting Graph Neural Networks [PDF]
    V. Bürgin, R. Prevost, M. F. Stollenga
    Image and Video Processing, July 2023
  • Deformable Registration of µCT and Histology Slides [PDF]
    J. Chen, V. Nguyen, V. Stehl, M. Al Kallaa, M. Thalwaththe Gedara, A. Harbecke, S. Moser, M. Seidl, M. Wieczorek
    International Symposium on Medical Applications of X-Ray Phase-Contrast and Photon-Counting (IMXP), July 2023
  • Deep learning-assisted radiomics facilitates multimodal prognostication for personalized treatment strategies in low-grade glioma [PDF]
    P. Rauch, H. Stefanits, M. Aichholzer, C. Serra, D. Vorhauer, H. Wagner, P. Böhm, S. Hartl, I. Manakov, M. Sonnberger, E. Buckwar, F. Ruiz-Navarro, K. Heil, M. Glöckel, J. Oberndorfer, S. Spiegl-Kreinecker, K. Aufschnaiter-Hiessböck, S. Weis, A. Leibetseder, W. Thomae, T. Hauser, C. Auer, S. Katletz, A. Gruber, M. Gmeiner
    Scientific Reports volume 13, Article number: 9494, June 2023
  • µCT-based identification of relevant tissue structures in paraffin blocks [PDF]
    V. Stehl, M. Al Kallaa, A. Harbecke, J. Chen, M. Wieczorek, M. Thalwaththe Gedara, S. Moser, V. Heusinger-Heß, M. Seidlo
    106. Jahrestagung der Deutschen Gesellschaft für Pathologie, June 2023
  • An automated optimization pipeline for clinical-grade computer-assisted planning of high tibial osteotomies under consideration of weight-bearing [PDF]
    T. Rotha, B. Sigrist, M. Wieczorek, N. Schilling, S. Hodel, J. Walker, M. Somm, W. Wein, R. Sutter, L. Vlachopoulos, J. G. Snedeker, S. F. Fucentese, P. Fürnstahl, F. Carrillo
    Computer Assisted Surgery, May 2023
  • Femur reconstruction in 3D ultrasound for orthopedic surgery planning [PDF]
    C. Gebhardt, L. Göttling, L. Buchberger, C. Ziegler, F. Endres, Q. Wuermeling, B. M. Holzapfel, W. Wein, F. Wagner, O. Zettinig
    International Journal of Computer Assisted Radiology and Surgery, April 2023
  • Orientation Estimation of Abdominal Ultrasound Images with Multi-Hypotheses Networks [PDF]
    T. Horstmann, O. Zettinig, W. Wein, R. Prevost
    Medical Imaging with Deep Learning -- MIDL 2022
  • PRO-TIP: Phantom for RObust automatic ultrasound calibration by TIP detection [PDF]
    M. Ronchetti, J. Rackerseder, M. Tirindelli, M. Salehi, N. Navab, W. Wein, O. Zettinig
    Medical Image Computing and Computer-Assisted Intervention--MICCAI 2022
  • Global Multi-modal 2D/3D Registration via Local Descriptors Learning [PDF]
    V. Markova, M. Ronchetti, W. Wein, O. Zettinig, R. Prevost
    Medical Image Computing and Computer-Assisted Intervention--MICCAI 2022
  • Autonomous Robotic Screening of Tubular Structures based only on Real-Time Ultrasound Imaging Feedback [PDF]
    Z. Jiang, Z. Li, M. Grimm, M. Zhou, M. Esposito, W. Wein, W. Stechele, T. Wendler, Nassir Navab
    IEEE Transactions on Industrial Electronics, Volume: 69, Issue 7, July 2022
  • Integrating 3D cameras into sterile surgical environments: A comparison of different protective materials regarding scan accuracy [PDF]
    L. Wagner, L. Bernhard, J. Fuchtmann, M. A. Karaoglu, A. Ladikos, H. Feußner, D. Wilhelm
    Current Directions in Biomedical Engineering 2022;8(1): 25-29, 2022
  • Standardized Evaluation of Current Ultrasound Bone Segmentation Algorithms on Multiple Datasets [PDF]
    P. Pandey, B. Hohlmann, P. Broessner, I. Hacihaliloglu, K. Barr, T. Ungi, O. Zettinig, R. Prevost, G. Dardenne, Z. Fanti, W. Wein, E. Stindel, F. Arambula Cosio, P. Guy, G. Fichtinger, K. Radermacher, A. Hodgson
    Accepted for CAOS 2022
  • Adversarial Domain Feature Adaptation for Bronchoscopic Depth Estimation [PDF]
    M. A. Karaoglu, N. Brasch, M. Stollenga, W. Wein, N. Navab, F. Tombari, and A. Ladikos
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Strasbourg, France, September 2021
  • Segmentation of brain tumour in 3D Intraoperative Ultrasound imaging [PDF]
    E. Angel-Raya, C. Chalopin, J. G. Avina-Cervantes, I. Cruz-Aceves, W. Wein, D. Lindner
    The International Journal of Medical Robotics and Computer Assisted Surgery, Volume 17, Issue 6, August 2021
  • Three-dimensional preoperative planning in the weight-bearing state: validation and clinical evaluation [PDF]
    T. Roth, F. Carrillo, M. Wieczorek, G. Ceschi, H. Esfandiari, R. Sutter, L. Vlachopoulos, W. Wein, SF. Fucentese, and P. Fürnstahl
    Insights Imaging 12, 44, 2021
  • Performance of automatic Liver Volumetry for Selective Internal Radiotherapy [URL]
    J.M. Guerra, M. Mustafa, T. Pandeva, F.A. Pinto, P. Matthies, J. Brosch-Lenz, M. Stollenga, O. Perret, A. Ladikos, S. Ziegler, A. Todica, G. Böning, N. Navab, S.G. Nekolla, W.A. Weber, T. Wendler
    Nuklearmedizin 2021; 60(02): 160, 2021
  • Three-dimensional thyroid assessment from untracked 2D ultrasound clips [PDF]
    W. Wein, M. Lupetti, O. Zettinig, S. Jagoda, M. Salehi, V. Markova, D. Zonoobi, and R. Prevost
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Lima, Peru, September 2020
  • Fluoroscopy-guided robotic biopsy intervention system [PDF]
    Y. Özbek, M. Vogele, C. Plattner, P. Costa, and M. Griesser and M. Wieczorek
    Current Directions in Biomedical Engineering, Volume 6, Issue 1, 20200020, eISSN 2364-5504
  • A novel method for 2D/3D registration between non-weight-bearing 3D CT-reconstructed models and weight-bearing plain radiographs for preoperative planning in lower limb realignment surgery
    T. Roth, M. Wieczorek, G. Ceschi, W. Wein, R. Sutter, S. Fucentese, and P. Fürnstahl
    Swiss Orthopaedics Jahreskongress (SGOT), Swiss, August 2020
  • Deep Learning Acceleration of OS-SIRT in X-Ray Cone-Beam Computed Tomography
    S. Haninger, M. Wieczorek, W. Wein, and T. Lasser
    International Conference on Image Formation in X-Ray Computed Tomography, Regensburg, Germany, July 2020
  • Evaluation of MRI to Ultrasound Registration Methods for Brain Shift Correction: The CuRIOUS2018 Challenge [PDF]
    Y. Xiao, H. Rivaz, M. Chabanas, M. Fortin, I. Machado, Y. Ou, M. Heinrich, J. Schnabel, X. Zhong, A. Maier, W. Wein, R. Shams, S. Kadoury, D. Drobny, M. Modat, I. Reinertsen
    IEEE Transactions on Medical Imaging, Vol. 39, Issue: 3 (March 2020)
  • Analyzing the co-localization of substantia nigra hyper-echogenicities and iron accumulation in Parkinson's disease: A multi-modal atlas study with transcranial ultrasound and MRI [PDF]
    S.-A. Ahmadi, K. Bötzel, J. Levin, J. Maiostre, T. Klein, W. Wein, V. Rozanski, O. Dietrich, B. Ertl-Wagner, N.. Navab, A. Plate
    NeuroImage: Clinical, Volume 26, Art. Nr. 102185 (2020)
  • An Ex Vivo Evaluation of Tomographic 3-D Ultrasound, B-Mode Ultrasound, CT And MR Imaging to Measure Artery Diameter, Length and Wall Volume [URL]
    S. Rogers, J. Carreira, R. Thompson, A. Morais, C. Miller, W. Wein, J. Ghosh, C. McCollum
    Ultrasound Med Biol. Volume 45, Issue 10, p2591-2854, 2019
  • Automatic intra-operative correction of brain-shift for accurate neuro-navigation [PDF]
    D.H. Iversen, W. Wein, F. Lindseth, G. Unsgård. I. Reinertsen
    World Neurosurgery, accepted / in press
  • Brain Connectivity Exposed by Anisotropic X-ray Dark-field Tomography [PDF]
    M. Wieczorek, F. Schaff, Ch. Jud, D. Pfeiffer, F. Pfeiffer, T. Lasser
    Scientific Reports Volume 8, Article number: 14345 (2018)
  • Robotic Ultrasound-Guided Facet Joint Insertion [URL]
    J. Esteban, W. Simson, S. Requena, A. Rienmüller, S. Virga, O. Zettinig, B. Frisch, S. Drazen, Y.-M. Ryang , N. Navab, C. Hennersperger
    International Journal of Computer Assisted Radiology and Surgery, 13 (6) 895-904, 2018
  • Recent Advances in Point-of-Care Ultrasound using the ImFusion Suite for Real-Time Image Analysis [URL]
    O. Zettinig, M. Salehi, R. Prevost, W. Wein
    Proceedings of MICCAI Workshop Point-of-Care Ultrasound: Algorithms, Hardware, and Applications (POCUS), Granada, Spain, September 2018.
  • Brain-shift correction with image-based registration and landmark accuracy evaluation [URL]
    W. Wein
    Proceedings of MICCAI Challenge for Correction of Brainshift with Intra-Operative UltraSound (CuRIOUS), Granada, Spain, September 2018.
  • Ultrasound Decompression for Large Field-of-View Reconstructions [PDF]
    C. Schulte zu Berge, M. Salehi, F. Bender, W. Wein
    Eurographics Workshop on Visual Computing in Biology and Medicine 2018, Granada, Spain, September 2018.
  • 3D freehand ultrasound without external tracking using deep learning [URL]
    R. Prevost, M. Salehi, S. Jagoda, N. Kumar, J. Sprung, A. Ladikos, R. Bauer, O. Zettinig, W. Wein
    Medical Image Analysis, Volume 48, 187-202, August 2018.
  • Deep Learning for Sensorless 3D Freehand Ultrasound Imaging [PDF]
    R. Prevost, M. Salehi, J. Sprung, A. Ladikos, R. Bauer, W. Wein
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Quebec City, Canada, September 2017.
  • Precise Ultrasound Bone Registration with Learning-based Segmentation and Speed of Sound Calibration [PDF]
    M. Salehi, R. Prevost, J.-L. Moctezuma, N. Navab, W. Wein
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Quebec City, Canada, September 2017.
  • Intra-operative ultrasound based correction of brain-shift [PDF]
    I. Reinertsen, D. H. Iversen, F. Lindseth, W. Wein, G. Unsgard
    Intraoperative Imaging Society Conference 2017, Hanover, Germany, May 2017.
  • Can real-time RGBD enhance intraoperative Cone-Beam CT? [URL]
    J. Fotouhi, B. Fuerst, W. Wein, N. Navab
    International Journal of Computer Assisted Radiology and Surgery / International Conference on Information Processing in Computer-Assisted Interventions (IPCAI), 2017.
  • Preconditioned Intensity-Based Prostate Registration using Statistical Deformation Models [PDF]
    O. Zettinig, J. Rackerseder, B. Lentes, T. Maurer, K. Westenfelder, M. Eiber, B. Frisch, N. Navab
    IEEE International Symposium on Biomedical Imaging (ISBI), Melbourne, April 2017.
  • On the Reproducibility of Expert-Operated and Robotic Ultrasound Acquisitions [URL]
    R. Kojcev, A. Khakzar, B. Fuerst, O. Zettinig, C. Fakhry, R. DeJong, J. Richmon, R. Taylor, E. Sinibaldi, N. Navab
    International Conference on Information Processing in Computer-Assisted Interventions (IPCAI), 2017.
  • 3D Ultrasound Registration-based Visual Servoing for Neurosurgical Navigation [PDF]
    O. Zettinig, B. Frisch, S. Virga, M. Esposito, A. Rienmaller, B. Meyer, C. Hennersperger, Y.-M. Ryang , N. Navab
    International Journal of Computer Assisted Radiology and Surgery, in press, 1536-2, 2017.
  • Towards MRI-Based Autonomous Robotic US Acquisitions: A First Feasibility Study [PDF]
    C. Hennersperger, B. Fuerst, S. Virga, O. Zettinig, B. Frisch, T. Neff, N. Navab
    IEEE Transactions on Medical Imaging, vol. 36, iss. 2, 2017.
  • Toward Real-time 3D Ultrasound Registration-based Visual Servoing for Interventional Navigation [PDF]
    O. Zettinig, B. Fuerst, R. Kojcev, M. Esposito, M. Salehi, W. Wein, J. Rackerseder, B. Frisch, N. Navab
    IEEE International Conference on Robotics and Automation (ICRA), Stockholm, Sweden, May 2016.
  • Automatic Force-Compliant Robotic Ultrasound Screening of Abdominal Aortic Aneurysms [PDF]
    S. Virga, O. Zettinig, M. Esposito, K. Pfister, B. Frisch, T. Neff, N. Navab, C. Hennersperger
    IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) 2016, pp. 508-513, 2016.
  • Dual-Robot Ultrasound-Guided Needle Placement: Closing the Planning-Imaging-Action Loop [PDF]
    R. Kojcev, B. Fuerst, O. Zettinig, J. Fotouhi, S.C. Lee, B. Frisch, R. Taylor, E. Sinibaldi, N. Navab
    International Journal of Computer Assisted Radiology and Surgery, vol. 11, iss. 6, pp. 1173-1181, 2016.
  • Patient-specific 3D ultrasound simulation based on convolutional ray-tracing and appearance optimization [PDF]
    M. Salehi, S.A. Ahmadi, R. Prevost, N. Navab, W. Wein
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Munich, Germany, October 2015.
  • Automatic bone detection and soft tissue aware ultrasound–CT registration for computer-aided orthopedic surgery [URL]
    W. Wein, A. Karamalis, A. Baumgartner, N. Navab
    International journal of computer assisted radiology and surgery 10 (6), 971-979.
  • Deriving Anatomical Context from 4D Ultrasound [PDF]
    M. Müller, L.E.S. Helljesen, R. Prevost, I. Viola, K. Nylund, O.H. Gilja, N. Navab, W. Wein
    VCBM 14: Eurographics Workshop on Visual Computing for Biology and Medicine, ISBN 978-3-905674-62-0.
  • Automatic ultrasound–MRI registration for neurosurgery using the 2D and 3D LC² Metric [URL]
    B. Fuerst, W. Wein, M. Müller, N. Navab
    Medical image analysis 18.8 (2014): 1312-1319.
  • Global Registration of Ultrasound to MRI using the LC² Metric for Enabling Neurosurgical Guidance [PDF]
    W. Wein, A. Ladikos, B. Fuerst, A. Shah, K. Sharma, N. Navab
    Proceedings of the 16th International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI), Nagoya, Japan, September 2013.
  • Towards General Motion Recovery in Cone-Beam Computed Tomography [PDF]
    W. Wein, A. Ladikos
    12th International Meeting on Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine, Lake Tahoe, USA, June 2013.
  • Geometric calibration using bundle adjustment for cone-beam computed tomography devices [PDF]
    A. Ladikos, W. Wein
    SPIE Medical Imaging, San Diego, USA, February 2012.
  • Image-Based Tracking of the Teeth for Orthodontic Augmented Reality [PDF]
    A. Aichert, W. Wein, A. Ladikos, T. Reichl, N. Navab
    Proceedings of the 15th International Conference on Medical Image Computing and Computer Assisted Interventions (MICCAI), Nice, France, October 2012.

2024

  • Evaluating Age-Related Anatomical Consistency in Synthetic Brain MRI against Real-World Alzheimer's Disease Data
    H. Yassin, J. Fehr, W. C. Lai, A. Krichevsky, A. Rakowski, C. Lippert
    Medical Imaging with Deep Learning, 2024
  • Evaluation of Body Shape as a Human Body Composition Assessment in Isolated Conditions and Remote Environments [PDF]
    M. C. Wong, J. P. Bennett, L. T. Leong, Y. E. Liu, N. N. Kelly, J. Cherry, K. Kloza, B. Li, S. Iuliano, J. Sibonga, et al.
    npj Microgravity, Vol. 10, No. 1, p. 72, 2024
  • Ultrasound Segmentation Analysis via Distinct and Completed Anatomical Borders [PDF]
    V. G. Duque, A. Marquardt, Y. Velikova, L. Lacourpaille, A. Nordez, M. Crouzier, H. J. Lee, D. Mateus, N. Navab
    International Journal of Computer Assisted Radiology and Surgery, pp. 1-9, Springer, May 25, 2024
  • Aortic Roadmapping During EVAR: A Combined FEM-EM Tracking Feasibility Study [LINK]
    M. Emendi, G. A. Tangen, P. Di Giovanni, H. Ulsaker, R. Brekken, F. Manstad-Hulaas, V. Prot, A. Bel-Brunon, K. H. Støverud
    International Journal of Computer Assisted Radiology and Surgery, 2024, pp. 1-9. Springer
  • Class-Aware Cartilage Segmentation for Autonomous US-CT Registration in Robotic Intercostal Ultrasound Imaging [LINK]
    Z. Jiang, Y. Kang, Y. Bi, X. Li, C. Li, N. Navab
    arXiv preprint arXiv:2406.04100, 2024
  • Chondrosarcoma Evaluation Using Hematein-Based X-Ray Staining and High-Resolution 3D Micro-CT: A Feasibility Study [PDF]
    A. S. Gersing, M. A. Kimm, C. Bollwein, P. Ilg, C. Mogler, F. G. Gassert, G. C. Feuerriegel, C. Knebel, K. Woertler, D. Pfeiffer, M. Busse, F. Pfeiffer
    European Radiology Experimental, V: 8, I: 1, p. 58, 2024
  • Autonomous Needle Navigation in Subretinal Injections via iOCT
    P. Zhang, J. W. Kim, P. Gehlbach, I. Iordachita, M. Kobilarov
    IEEE Robotics and Automation Letters, 2024
  • Prospective Deep Learning-Based Quantitative Assessment of Coronary Plaque by CT Angiography Compared with Intravascular Ultrasound [LINK]
    J. Narula, T. D. Stuckey, G. Nakazawa, A. Ahmadi, M. Matsumura, K. Petersen, S. Mirza, N. Ng, S. Mullen, M. Schaap, et al.
    European Heart Journal - Cardiovascular Imaging, jeae115, Published: 03 May 2024
  • 3D Ultrasound Mosaic of the Whole Shoulder: A Feasibility Study
    A. Sewify, M. Antico, M. Steffens, J. Roots, A. Gupta, K. Cutbush, P. Pivonka, D. Fontanarosa
    Applied Sciences, V: 14, I: 5, 2024, pp. 2152
  • CathFlow: Self-Supervised Segmentation of Catheters in Interventional Ultrasound Using Optical Flow and Transformers [PDF]
    A. Ranne, L. Kuang, Y. Velikova, N. Navab, F. Rodriguez y Baena
    arXiv preprint arXiv:2403.14465, 2024
  • Real-World Federated Learning in Radiology: Hurdles to Overcome and Benefits to Gain [LINK]
    M. R. Bujotzek, Ü. Akünal, S. Denner, P. Neher, M. Zenk, E. Frodl, A. Jaiswal, M. Kim, N. R. Krekiehn, M. Nickel, et al.
    arXiv preprint arXiv:2405.09409, 2024
  • Comparison of Virtual Non-Contrast and True Non-Contrast CT Images Obtained by Dual-Layer Spectral CT in COPD Patients [LINK]
    M. Steinhardt, A. W. Marka, S. Ziegelmayer, M. Makowski, R. Braren, M. Graf, J. Gawlitza
    Bioengineering, Vol. 11, No. 4, p. 301, MDPI, 2024
  • Transformer-Based Local Feature Matching for Multimodal Image Registration
    R. Delaunay, R. Zhang, F. C. Pedrosa, N. Feizi, D. Sacco, R. V. Patel, J. Jagadeesan
    Medical Imaging 2024: Image Processing, Vol. 12926, pp. 138-143. SPIE, 2024
  • The Influence of the Weight-Bearing State on Three-Dimensional (3D) Planning in Lower Extremity Realignment--Analysis of Novel vs. State-of-the-Art Planning Approaches [PDF]
    S. Hodel, T. Arn-Roth, F. Haug, F. Carillo, L. Vlachopoulos, S. F. Fucentese, P. Fürnstahl
    Archives of Orthopaedic and Trauma Surgery, Vol. 144, No. 5, pp. 1989-1996. Springer, 2024
  • Ultra-NeRF: Neural Radiance Fields for Ultrasound Imaging
    M. Wysocki, M. F. Azampour, C. Eilers, B. Busam, M. Salehi, N. Navab
    Medical Imaging with Deep Learning, pp. 382-401. January 2024. PMLR
  • CACTUSS: Common Anatomical CT-US Space for US Examinations
    Y. Velikova, W. Simson, M. F. Azampour, P. Paprottka, N. Navab
    International Journal of Computer Assisted Radiology and Surgery, 1-9. 2024
  • A Target Containing Phantom for Accuracy Assessment of Cone-Beam CT-Guided Histotripsy [PDF]
    A. Z. Kutlu, G. M. Minesinger, P. F. Laeseke, M. Speidel, M. G. Wagner
    Journal of Applied Clinical Medical Physics, e14329, Wiley Online Library, 2024
  • Shape Completion in the Dark: Completing Vertebrae Morphology from 3D Ultrasound
    M. A. Gafencu, Y. Velikova, M. Saleh, T. Ungi, N. Navab, T. Wendler, M. F. Azampour
    International Journal of Computer Assisted Radiology and Surgery, 1-9. 2024
  • Multitask Weakly Supervised Generative Network for MR-US Registration
    M. F. Azampour, K. Mach, E. Fatemizadeh, B. Demiray, K. Westenfelder, K. Steiger, ... N. Navab
    IEEE Transactions on Medical Imaging. 2024
  • Validation of a Three-Dimensional Weight-Bearing Measurement Protocol for Medial Open-Wedge High Tibial Osteotomy [LINK]
    S. Hodel, J. Hasler, T. A. Roth, A. Flury, C. Sutter, S. F. Fucentese, P. Fürnstahl, L. Vlachopoulos
    Journal of Clinical Medicine, Vol. 13, No. 5, p. 1280, MDPI, 2024
  • 2023

  • Towards Safe and Collaborative Robotic Ultrasound Tissue Scanning in Neurosurgery.
    M. Dyck, A. Weld, J. Klodmann, A. Kirst, L. Dixon, G. Anichini, S. Camp, A. Albu-Schäffer, S. Giannarou
    arXiv preprint arXiv:2312.08409, December 2023
  • Path Re-planning for Robotic Ultrasound Imaging of Bony Structures
    K. Van Assche, A. Davoodi, R. Li, M. Ourak, E. Vander Poorten
    Robot-Assisted Surgery (RAS) Group, July 2023
  • Feature-Based Electromagnetic Tracking Registration Using Bioelectric Sensing
    A. Ramadani, H. Maier, F. Bourier, C. Meierhofer, P. Ewert, H. Schunkert, N. Navab
    IEEE Robotics and Automation Letters, V: 8, I: 6, June 2023
  • Feasibility and Accuracy of Measuring Carotid Plaque Volume (Burden) With Contrast-Enhanced Tomographic 3D Ultrasound and Ultrasound Image Fusion
    S.K. Rogers, A. Phair, J. Carriera, J. Ghosh, F.L. Bowling, C. McCollum.
    Annals of Vascular Surgery, V. 91, 168-175, April 2023
  • Automated robotic intraoperative ultrasound for brain surgery
    M. Dyck, A. Weld, J. Klodmann, A. Kirst, G. Anichini, L. Dixon, S. Camp, S. Giannarou, A. Albu-Schäffer
    ICRA-RAMI workshop, April 2023
  • Skeleton Graph-Based Ultrasound-CT Non-Rigid Registration
    W. Simson, M. F. Azampour, S. Sanei, N. Navab
    IEEE Robotics and Automation Letters, V: 8, I: 2, 2023
  • DOPUS-Net: Quality-Aware Robotic Ultrasound Imaging Based on Doppler Signal
    W. Simson, M. F. Azampour, S. Sanei, N. Navab
    IEEE Transactions on Automation Science and Engineering (TASE), 2023
  • Intelligent Robotic Sonographer: Mutual Information-Based Disentangled Reward Learning from Few Demonstrations
    W. Simson, M. F. Azampour, S. Sanei, N. Navab
    International Journal of Robotics Research (IJRR), 2023
  • MI-SegNet: Mutual Information-Based US Segmentation for Unseen Domain Generalization
    W. Simson, M. F. Azampour, S. Sanei, N. Navab
    Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2023 (Best Paper Runner-Up)
  • DefCor-Net: Physics-Aware Ultrasound Deformation Correction
    W. Simson, M. F. Azampour, S. Sanei, N. Navab
    Medical Image Analysis (MedIA), 2023
  • Towards transcervical ultrasound image guidance for transoral robotic surgery
    Chen, W., Kalia, M., Zeng, Q., Pang, E. H., Bagherinasab, R., Milner, T. D., Sabiq, F., Prisman, E., and Salcudean, S. E.
    International Journal of Computer Assisted Radiology and Surgery, 1-8., April 2023
  • Robotic Navigation Autonomy for Subretinal Injection via Intelligent Real-Time Virtual iOCT Volume Slicing
    S. Dehghani, M. Sommersperger, P. Zhang, A. Martin-Gomez, B. Busam, P. Gehlbach, N. Navab, M. A. Nasseri, I. Iordachita
    IEEE International Conference on Robotics and Automation, ICRA 2023
  • Implicit Neural Representations for Breathing-compensated Volume Reconstruction in Robotic Ultrasound Aorta Screening
    Y. Velikova, M. F. Azampour, W. Simson, M. Esposito, N. Navab
    arXiv preprint arXiv:2311.04999. 2023
  • LOTUS: Learning to Optimize Task-based US Representations
    Y. Velikova, M. F. Azampour, W. Simson, V. Gonzalez Duque, N. Navab
    International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 435-445. October 2023. Cham: Springer Nature Switzerland
  • Self-supervised Probe Pose Regression via Optimized Ultrasound Representations for US-CT Fusion
    M. F. Azampour, Y. Velikova, E. Fatemizadeh, S. P. Dakua, N. Navab
    International Conference on Medical Imaging and Computer-Aided Diagnosis, pp. 111-121. December 2023. Singapore: Springer Nature Singapore
  • Assessment of thoracic spinal curvatures in static postures using spatially tracked 3D ultrasound volumes: a proof-of-concept study
    L. Meszaros-Beller, M. Antico, D. Fontanarosa, P. Pivonka
    Physical and Engineering Sciences in Medicine, 46, 197–208, January 2023
  • Navigation protocol configuration based on data from transverse imaging methods for the precise placement of radioactive source in patients undergoing brachytherapy
    D. A. Liakopoulos
    University of Crete, Medical and Health Sciences, Clinical Medicine, Ophthalmology, 2023
  • 2022

  • A tool for high-resolution volumetric optical coherence tomography by compounding radial-and linear acquired B-scans using registration.
    C. M. Bosch, C. Baumann, S. Dehghani, M. Sommersperger, N. Johannigmann-Malek, K. Kirchmair, M. Maier, M. A. Nasseri
    Sensors, 22(3), 1135, 2022/div>
  • Learning-Based US-MR Liver Image Registration with Spatial Priors
    Q. Zeng, S. Mohammed, E. H. T. Pang, C. Schneider, M. Honarvar, J. Lobo, C. Hu, J. Jago, G. Ng, R. Rohling, S. E. Salcudean
    Medical Image Computing and Computer Assisted Intervention – MICCAI 2022 pp 174–184, September 2022
  • CACTUSS: Common Anatomical CT-US Space for US Examinations
    Y. Velikova, W. Simson, M. Salehi, M. F. Azampour, P. Paprottka, N. Navab
    Medical Image Computing and Computer Assisted Intervention – MICCAI 2022
  • Precise Repositioning of Robotic Ultrasound: Improving Registration-Based Motion Compensation Using Ultrasound Confidence Optimization
    Z. Jiang, N. Danis, Y. Bi, M. Zhou, M. Kroenke, T. Wendler, N. Navab
    IEEE Transactions on Instrumentation and Measurement, V: 71, August 2022
  • Tracked 3D ultrasound and deep neural network-based thyroid segmentation reduce interobserver variability in thyroid volumetry
    M. Krönke, C. Eilers, D. Dimova, M. Köhler, G. Buschner, L. Schweiger, L. Konstantinidou, M. Makowski, J. Nagarajah, N. Navab, W. Weber, T Wendler
    PLoS ONE 17(7): e0268550, July 2022
  • 3D osteotomies—improved accuracy with patient-specific instruments (PSI)
    M. Jörgens, A. M. Keppler, P. Ahrens, W. C. Prall, M. Bergstraesser, A. T. Bachmeier, C. Zeckey, A. C. Kußmaul, W. Böcker, J. Fürmetz
    European Journal of Trauma and Emergency Surgery, July 2022
  • How are Lung Volume and Respiratory Muscles Affected in Non-Severe Patients With Covid-19?
    I. Ucar, M. S. Cosgun, F. Cankal, C. Kararti, E. Kurtoglu, A. Payas, D. Patat, M. Nisari
    MEDICAL RECORDS-International Medical Journal, 4(2):203-8, 2022
  • Bioelectric Registration of Electromagnetic Tracking and Preoperative Volume Data
    A. Ramadani, H. Maier, F. Bourier, C. Meierhofer, P. Ewert, H. Schunkert, N. Navab
    Medical Physics, June 2022
  • Endoscopic measurement of nasal septum perforations
    J.-C. Rosenthal, E. L. Wisotzky, C. Matuschek, M. Hobl, A. Hilsmann, P. Eisert, F. C. Uecker
    HNO, 70(1), pp.1-7, 2022
  • Precise Repositioning of Robotic Ultrasound: Improving Registration-Based Motion Compensation Using Ultrasound Confidence Optimization
    Z. Jiang, N. Danis, Y. Bi, M. Zhou, M. Kroenke, T. Wendler, N. Navab
    IEEE Transactions on Instrumentation and Measurement, V: 71, pp. 1-11, 2022
  • Assessment of spinal curvatures in static postures using localized 3D ultrasound: A proof-of-concept studylocalized 3D ultrasound: A proof-of-concept study
    L. Meszaros-Beller, M. Antico; D. Fontanarosa, P. Pivonka
    Queensland University of Technology, 2022
  • Longitudinal Analysis of Disease Progression Using Image and Laboratory Data for Covid-19 Patients
    F. De Benetti, V. Bentele, E. Burian, M. Makowski, N. Navab, R. Braren, T. Wendler
    Bildverarbeitung für die Medizin, pp 179–184, April 2022
  • 2021

  • Motion-Aware Robotic 3D Ultrasound
    Z. Jiang, H. Wang, Z. Li, M. Grimm, M. Zhou, U. Eck, S. V. Brecht, T. C. Lueth, T. Wendler, N. Navab
    IEEE International Conference on Robotics and Automation (ICRA), 2021
  • MRI and dual-energy CT fusion anatomic imaging in Ru-106 ophthalmic brachytherapy
    E. T. Detorakis, K. Perisinakis, E. Drakonaki, D. Liakopoulos, A. Tzedakis, E. Papadaki, M. K. Tsilimbaris
    Brachytherapy, Volume 20, Issue 4, 828-834, 2021
  • Deformation-Aware Robotic 3D Ultrasound
    W. Simson, M. F. Azampour, S. Sanei, N. Navab
    IEEE Robotics and Automation Letters, V: 6, I: 4, 2021
  • Usability of Graphical Visualizations on a Tool-Mounted Interface for Spine Surgery
    L. Schütz, C. Brendle, J. Esteban, S. M. Krieg, U. Eck, N. Navab
    Journal of Imaging, 7(8), 159, 2021
  • Novel Low-Dose CT based Automatic Segmentation and Registration Framework for Liver Radioembolization Planning
    J.M. Guerra, M. Mustafa, M. Krönke, N. Navab, S.G. Nekolla, W.A. Weber, T. Wendler
    Nuklearmedizin; 60(02): 180-181, 2021
  • 2020

  • Ultrasound-guided Robotic Navigation with Deep Reinforcement Learning
    H. Hase, M. F. Azampour, M. Tirindelli, M. Paschali, W. Simson, E. Fatemizadeh, N. Navab
    2020 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), pp. 5534-5541. October 2020. IEEE
  • Bayesian CNN for Segmentation Uncertainty Inference on 4D Ultrasound Images of the Femoral Cartilage for Guidance in Robotic Knee Arthroscopy
    M. Antico, F. Sasazawa, Y. Takeda, A. T. Jaiprakash, M-L. Wille, A. K. Pandey, R. Crawford, G. Carneiro, D. Fontanarosa
    IEEE Volume 8, December 2020
  • Surgical Guidance for Removal of Cholesteatoma using a Multispectral 3D-Endoscope
    E. L.Wisotzky, J. C. Rosenthal, U. Wege, A. Hilsmann, P. Eisert, F. C. Uecker
    Sensors, 20(18), p.5334, 2020
  • Manual segmentation versus semi-automated segmentation for quantifying vestibular schwannoma volume on MRI
    H. McGrath, P. Li, R. Dorent, R. Bradford, S. Saeed, S. Bisdas, S. Ourselin, J. Shapey, T. Vercauteren
    International Journal of Computer Assisted Radiology and Surgery, 15:1445–1455, 2020
  • Novel Approach to calculate Callus Distraction Forces in Distraction Osteogenesis and Application in the Human Tibia
    A. Bachmeier, R. Bader, U. Schreiber, P.H. Thaller
    Z Orthop Unfall; 158(S 01): S150, 2020
  • Biomechanischer Einfluss einer optimierten Positionierung von Pollerschrauben auf die Primärstabilität von Nagelosteosynthesen
    P. Kutschera, L. Hofer, U. Schreiber, P.H. Thaller
    Z Orthop Unfall; 158(S 01): S274, 2020
  • Computergestützte Benchmarkstudie von Osteosyntheseplatten für die Behandlung des kindlichen proximalen Femurs
    C. Fritz, A. Bachmeier, M. Kebbach, R. Bader, H. Böhm
    Z Orthop Unfall; 158(S 01): S47-S48, 2020
  • 2019

  • Duplex and 3-D Tomographic Ultrasound Measures that Predict Abdominal Aortic Aneurysm Growth
    M. Khan, S. Rogers, C. McCollum
    European Journal of Vascular and Endovascular Surgery, Volume 58, Issue 6, SUPPLEMENT 2, e301-e302, December 2019
  • 2017

  • 3D intra-operative ultrasound and MR image guidance: pursuing an ultrasound-based management of brainshift to enhance neuronavigation
    M. Riva, C. Hennersperger, F. Milletari, A. Katouzian, F. Pessina, B. Gutierrez-Becker, A. Castellano, N. Navab, L. Bello
    International Journal of Computer Assisted Radiology and Surgery, pp. 1711-1725, October 2017
  • 2016

  • Advanced inside-out tracking approach for real-time combination of MRI and US images in the radio-frequency shielded room using combination markers
    Y. Nagaraj, C. Benedicks, P. Matthies, M. Friebe
    Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the (pp. 2558-2561), 2016
  • CustusX: an open-source research platform for image-guided therapy
    C. Askeland, O. Solberg, J. Bakeng, I. Reinertsen, G. Tangen, E. Hofstad, D. Iversen, C. Vapenstad, T. Selbekk, T. Lango¸, T. Hernes, H. Leira, G. Unsgard, F. Lindseth
    International Journal of Computer Assisted Radiology and Surgery, vol. 11, iss. 4, pp 505-519, 2016
  • Preclinical usability study of multiple augmented reality concepts for K-wire placement
    M. Fischer, B. Fuerst, S.C. Lee, J. Fotouhi, S. Habert, S. Weidert, E. Euler, G. Osgood, N. Navab
    International Journal of Computer Assisted Radiology and Surgery, vol. 11, iss. 6, pp. 1007-1014, 2016
  • Ultrasound-guided neurosurgery: experiences from 20 years of cross-disciplinary research in Trondheim, Norway
    T. Selbekk, O. Solheim, G. Unsgård
    Neurosurg Focus, 40 (3):E2, 2016
  • Cooperative control with ultrasound guidance for radiation therapy
    H.T. Åžen, A. Cheng, K. Ding, E. Boctor, J. Wong, I. Iordachita, P. Kazanzides
    Frontiers in Robotics and AI 3, 49, 2016
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